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Table 2 Association of SNP genotype with HCV infection

From: APOB codon 4311 polymorphism is associated with hepatitis C virus infection through altered lipid metabolism

   Alleles HCV Overall genotype distribution(n) P-value Comparison of specific genotypes P-value
(χ2 value) (χ2 value)
APOA1 rs613808 G/A   AA GA GG    
+ 72 74 12 0.192   
120 83 17 (3.297)   
rs2727784 G/A   GG GA AA    
+ 75 71 12 0.290   
122 82 16 (2.473)   
rs11216158 A/G   GG AG AA    
+ 99 56 3 0.231   
150 62 8 (2.933)   
APOB rs676210 C/T   TT CT CC    
+ 88 57 13 0.091 TT + CT vs CC 0.031
133 80 7 (4.784)   (4.673)
rs1042031 G/A   GG GA AA    
+ 150 8 0    
205 15 0    
rs693 C/T   CC CT TT    
+ 147 11 0    
199 21 0    
rs1801701 G/A   GG GA AA    
+ 158 0 0    
220 0 0    
rs1042034 A/G   GG AG AA    
+ 88 57 13 0.051 GG + AG vs AA 0.016
134 80 6 (5.963)   (5.828)
SR-B1 rs4238001 G/A   GG GA AA    
+ 157 1 0    
220 0 0    
rs61932577 C/T   CC CT TT    
+ 158 0 0    
220 0 0    
rs5888 C/T   CC CT TT    
+ 96 54 10 0.761   
128 82 10 (0.546)   
LDLR rs17249134 T/G   GG TG TT    
+ 158 0 0    
220 0 0    
rs17249141 T/C   CC TC TT    
+ 158 0 0    
220 0 0    
rs2228671 C/T   CC CT TT    
+ 156 2 0    
219 1 0    
rs11669576 A/G   GG AG AA    
+ 158 0 0    
220 0 0    
rs5930 G/A   GG GA AA    
+ 66 73 19 0.957   
89 105 26 (0.088)   
rs688 T/C   CC TC TT    
+ 120 36 2 0.664   
160 55 5 (0.820)   
rs5925 C/T   TT CT CC    
+ 114 42 2 0.479   
149 65 6 (1.472)   
rs2569542 A/G   GG AG AA    
+ 138 19 1 0.935   
190 28 2 (0.135)   
rs14158 G/A   GG GA AA    
+ 58 75 25 0.928   
84 100 36 (0.150)   
APOE rs429358 T/C   TT TC CC    
+ 131 27 0 0.564   
177 41 2 (0.333)   
rs7412 C/T   CC CT TT    
+ 142 16 0    
196 24 0