Skip to main content

Table 3 Sequence identity matrix of partial ureC gene of Iranian ruminant Helicobacter pylori in comparison with 8 known human reference sequences

From: Study of Helicobacter pylori genotype status in cows, sheep, goats and human beings

Seq Cow-1 Cow-2 Cow-3 Sheep-1 Sheep-2 Sheep-3 FN598874-Germany CP003476-USA DQ462665-Iran GU445163-Iran M60398-France NC017361-S Africa DQ141576-China AB664954-Japan
Cow-1 ID 0.999 1 0.989 0.987 0.991 0.953 0.962 0.932 0.941 0.928 0.920 0.926 0.926
Cow-2 0.999 ID 0.999 0.987 0.988 0.986 0.950 0.966 0.936 0.940 0.929 0.918 0.924 0.923
Cow-3 1 0.999 ID 0.992 0.986 0.993 0.927 0.964 0.932 0.944 0.930 0.916 0.922 0.923
Sheep-1 0.989 0.987 0.991 ID 1 0.998 0.983 0.979 0.976 0.973 0.967 0.937 0.952 0.954
Sheep-2 0.987 0.988 0.986 1 ID 0.999 0.985 0.981 0.978 0.981 0.966 0.934 0.958 0.959
Sheep-3 0.991 0.986 0.993 0.998 0.999 ID 0.980 0.983 0.969 0.980 0.964 0.929 0.961 0.962
FN598874-Germany 0.953 0.950 0.957 0.983 0.985 0.980 ID 0.986 0.992 0.991 0.985 0.983 0.976 0.984
CP003476-USA 0.962 0.966 0.964 0.979 0.981 0.983 0.986 ID 0.990 0.993 0.984 0.979 0.980 0.983
DQ462665-Iran 0.932 0.936 0.932 0.976 0.978 0.969 0.992 0.990 ID 1 0.982 0.969 0.983 0.986
GU445163-Iran 0.941 0.940 0.944 0.973 0.981 0.980 0.991 0.993 1 ID 0.985 0.970 0.986 0.989
M60398-France 0.928 0.929 0.930 0.967 0.966 0.964 0.985 0.984 0.982 0.985 ID 0.975 0.990 0.991
NC017361-S Africa 0.920 0.918 0.916 0.937 0.934 0.929 0.983 0.979 0.969 0.970 0.975 ID 0.993 0.989
DQ141576-China 0.926 0.924 0.922 0.952 0.958 0.961 0.976 0.980 0.983 0.986 0.990 0.993 ID 0.994
AB664954-Japan 0.926 0.923 0.923 0.954 0.959 0.962 0.984 0.983 0.986 0.989 0.991 0.989 0.994 ID