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Table 2 Primers Designs for qPCR

From: Transcript levels of Toll-Like receptors 5, 8 and 9 correlate with inflammatory activity in Ulcerative Colitis

Gene

GENEBANK

PRIMERS (5'-3')

Amplicon Size (bp)

PROBE UPL

TLR1

NM_003263.3

CCTAGCAGTTATCACAAGCTCAAA

70

#79

  

TCTTTTCCTTGGGCCATTC

  

TLR2

NM_003264.3

CGTTCTCTCAGGTGACTGCTC

66

#14

  

TCTCCTTTGGATCCTGCTTG

  

TLR3

NM_003265.2

AGTTGTCATCGAATCAAATTAAAGAG

61

#80

  

AATCTTCCAATTGCGTGAAAA

  

TLR4

NM_138554.2

CTGCGTGAGACCAGAAAGC

75

#33

  

TTCAGCTCCATGCATTGATAA

  

TLR5

NM_003268.4

GACACAATCTCGGCTGACTG

105

#16

  

TCAGGAACATGAACATCAATCTG

  

TLR6

NM_006068.2

TGAAACAGTCTCTTTTGSGTAAATGC

72

#55

  

CAGAATCCATTTGGGAAAGC

  

TLR7

NM_016562.3

CCAGTGTCTAAAGAACCTGGAAA

63

#5

  

TCAGGGACAGTGGTCAGTTG

  

TLR8

NM_138636.2

AGCACTTCCCTCAGGAAGATT

62

#27

 

NM_016610.2

AGCACCTTCAGATGAGGCATA

  

TLR9

NM_017442.2

CCAGACCCTCTGGAGAAGC

133

#81

  

GTAGGAAGGCAGGCAAGGT

  

TOLLIP

NM_019009.2

TCCCCGCTGGAATAAGGT

95

#86

  

CGTCCATGGAGAAGGCTCT

  

TNFA

NM_000594.2

CAGCCTCTTCTCCTTCCTGA

123

#29

  

GCCAGAGGGCTGATTAGAGA

  

IL6

NM_000600

GCCCAGCTATGAACTCCTTCT

86

#45

  

GAAGGCAGCAGGCAACAC

  

*RPLP0

NM_001002.3

ACAGGGCGACCTGGAAGT

117

#32

 

NM_053275.3

GGATCTGCTGCATCTGCTT

  

*GADPH

NM_002046.3

AGCCACATCGCTCAGACAC

66

#60

  

GCCCAATACGACCAAATCC

  

ACTB

ENST00000331789.2

CAACCGCGAGAAGATGAC

121

560 nm

  

GTCCATCACGATGCCAGT

  
  1. Note. TLR8, and RPLP0 assays were designed to detect both transcript isoforms, UPL (Universal Probe Library).