Skip to main content

Table 1 Overview of chip quality control

From: A novel ceRNA-immunoregulatory axis based on immune cell infiltration in ulcerative colitis-associated colorectal carcinoma by integrated weighted gene co-expression network analysis

Array Samplenames *1 *2 *3 Group
1 GSM915451 UC
2 GSM915452 UC
3 GSM915453 UC
4 GSM915454 UC
5 GSM915455 NC
6 GSM915456 NC
7 GSM915457 NC
8 GSM915458 NC
9 GSM915459 NC
10 GSM915460 CAC
11 GSM915461 CAC
12 GSM915462 CAC
13 GSM915463 CAC
14 GSM915464 CAC
15 GSM915465 CAC
16 GSM915466 CAC
17 GSM915467 CAC
18 GSM915468 CAC
19 GSM915469 CAC
20 GSM915470 CAC
  1. Columns named as *1, *2, and *3 indicate calls from different outlier detection methods: (1) outlier detection by boxplots; (2) outlier detection by distances between arrays (density plots); and (3) batch effect detection using principal component analysis plots and array clustering heatmaps. “√” indicates the presence of an outlier; “–” indicates the absence of an outlier
  2. UC ulcerative colitis, NC normal control, CAC ulcerative colitis-associated colorectal cancer