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Table 1 Overview of chip quality control

From: A novel ceRNA-immunoregulatory axis based on immune cell infiltration in ulcerative colitis-associated colorectal carcinoma by integrated weighted gene co-expression network analysis

Array

Samplenames

*1

*2

*3

Group

1

GSM915451

UC

2

GSM915452

UC

3

GSM915453

UC

4

GSM915454

UC

5

GSM915455

NC

6

GSM915456

NC

7

GSM915457

NC

8

GSM915458

NC

9

GSM915459

NC

10

GSM915460

CAC

11

GSM915461

CAC

12

GSM915462

CAC

13

GSM915463

CAC

14

GSM915464

CAC

15

GSM915465

CAC

16

GSM915466

CAC

17

GSM915467

CAC

18

GSM915468

CAC

19

GSM915469

CAC

20

GSM915470

CAC

  1. Columns named as *1, *2, and *3 indicate calls from different outlier detection methods: (1) outlier detection by boxplots; (2) outlier detection by distances between arrays (density plots); and (3) batch effect detection using principal component analysis plots and array clustering heatmaps. “√” indicates the presence of an outlier; “–” indicates the absence of an outlier
  2. UC ulcerative colitis, NC normal control, CAC ulcerative colitis-associated colorectal cancer