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Table 1 CpGs targeted in the NGS assay

From: Evaluation of circulating cell-free DNA in cholestatic liver disease using liver-specific methylation markers

CpG name

Chromosome

Locationa

Read count median (IQR)

Unmethylated ratio median (IQR)

ITIH4-1

3

52,830,996

36,680 (31,875–44,483)

0.280 (0.216–0.346)

ITIH4-2

3

52,831,009

36,718 (31,854–44,520)

0.035 (0.012–0.067)

ITIH4-3

3

52,831,051

36,624 (31,843–44,426)

0.089 (0.064–0.129)

ITIH4-4

3

52,831,059

36,420 (31,637–44,149)

0.099 (0.075–0.137)

IGF2R-1

6

160,079,556

38,527 (31,251–44,719)

0.049 (0.025–0.077)

IGF2R-2

6

160,079,562

38,498 (31,238–44,699)

0.041 (0.023–0.066)

IGF2R-3

6

160,079,586

38,584 (31,288–44,758)

0.033 (0.015–0.062)

IGF2R-4

6

160,079,588

38,574 (31,292–44,757)

0.038 (0.019–0.066)

IGF2R-5

6

160,079,593

38,564 (31,255–44,715)

0.030 (0.015–0.056)

IGF2R-6

6

160,079,595

37,314 (30,258–43,314)

0.035 (0.020–0.069)

IGF2R-7

6

160,079,606

36,947 (30,090–43,003)

0.033 (0.021–0.067)

VTN-1

17

28,369,323

10,402 (8209–13,100)

0.064 (0.030–0.108)

VTN-2

17

28,369,333

10,365 (8187–13,077)

0.045 (0.014–0.086)

VTN-3

17

28,369,339

10,646 (8210–13,097)

0.049 (0.019–0.095)

VTN-4

17

28,369,351

10,379 (8195–13,060)

0.052 (0.023–0.092)

VTN-5

17

28,369,368

9058 (6937–11,259)

0.062 (0.030–0.109)

  1. aHG38 human genome coordinates