From: Analysis of the relationship between MIR155HG variants and gastric Cancer susceptibility
SNP ID | Genes | Chr. | Position | Alleles A/B | MAF | p-HWEa | pb | OR(95%CI) | HaploReg | |
---|---|---|---|---|---|---|---|---|---|---|
Case | Control | |||||||||
rs4143370 | MIR155HG | chr21 | 25,564,661 | C/G | 0.156 | 0.175 | 0.087 | 0.255 | 0.87 (0.69–1.10) | Promoter histone marks, Enhancer histone marks, DNAse, Proteins bound, Motifs changed, Selected eQTL hits |
rs77218221 | MIR155HG | chr21 | 25,565,063 | C/T | 0.042 | 0.056 | 0.662 | 0.131 | 0.73 (0.48–1.10) | Promoter histone marks, Enhancer histone marks, Motifs changed |
rs77699734 | MIR155HG | chr21 | 25,566,995 | C/G | 0.096 | 0.092 | 0.293 | 0.778 | 1.04 (0.77–1.41) | Promoter histone marks, Enhancer histone marks, DNAse, Proteins bound |
rs11911469 | MIR155HG | chr21 | 25,567,971 | A/C | 0.127 | 0.103 | 0.339 | 0.089 | 1.27 (0.96–1.67) | Promoter histone marks, Enhancer histone marks, DNAse, Proteins bound, Motifs changed |
rs1893650 | MIR155HG | chr21 | 25,568,503 | C/T | 0.189 | 0.174 | 0.535 | 0.391 | 1.10 (0.88–1.39) | Promoter histone marks, Enhancer histone marks, DNAse, Proteins bound, Motifs changed, GRASP QTL hits, Selected eQTL hits |
rs34904192 | MIR155HG | chr21 | 25,569,623 | A/G | 0.252 | 0.266 | 0.423 | 0.473 | 0.93 (0.76–1.14) | Promoter histone marks, Enhancer histone marks, DNAse, Proteins bound, Motifs changed, Selected eQTL hits |
rs928883 | MIR155HG | chr21 | 25,571,713 | A/G | 0.435 | 0.460 | 0.785 | 0.256 | 0.90 (0.76–1.08) | Enhancer histone marks, DNAse, Proteins bound, Motifs changed, Selected eQTL hits |