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Table 3 Distribution of genotype frequencies according to IM and HP infection status

From: Genetic factors associated with intestinal metaplasia in a high risk Singapore-Chinese population: a cohort study

Gene polymorphism

(rs number)

Genotype

IM-

IM+

HP-

HP+

    

IM-

IM+

IM-

IM+

ADPRT Val762Ala

(rs1136410)

TT

71

31

33

9

38

22

 

TC

117

60

64

24

53

36

 

CC

33

16

13

6

20

10

EGF +61A/G

(rs4444903)

AA

22

5

13

1

9

4

 

AG

103

55

54

20

49

35

 

GG

110

58

50

18

60

40

FR-α 1314A/G

(none)

GG

164

95

74

30

90

65

 

GA

74

31

43

12

31

19

 

AA

6

1

5

0

1

1

HER2 Ile/Val

(rs1801200)

AA

174

92

87

32

87

60

 

AG

60

30

29

8

31

22

 

GG

1

1

1

1

0

0

IL1RN 86-bp VNTR

(none)

44

212

101

112

33

100

68

 

24

28

18

9

4

19

14

 

34

1

2

0

2

1

0

 

54

0

1

0

0

0

1

 

22

2

2

0

1

2

1

IL-1β -511C/T

(rs16944)

CC

64

35

33

10

31

25

 

CT

119

62

63

21

56

41

 

TT

48

23

20

10

28

13

IL-10 -819T/C

(rs1800871)

TT

131

55

57

21

74*

34

 

TC

78

46

39

15

39

31

 

CC

22

16

17

3

5

13

IL-10 -1082A/G

(rs1800896)

AA

207

100

98

37

109

63

 

AG

21

14

13

3

8

11

 

GG

2

0

2

0

0

0

MMP2 -1306C/T

(rs243865)

CC

178

79

85

28

93

51

 

CT

46

22

26

8

20

14

 

TT

3

2

2

0

1

2

MTHFR 667C/T

(rs1801133)

CC

132

77

64

23

68

54

 

CT

98

42

50

16

48

26

 

TT

14

7

8

2

6

5

NQO1 609C/T

(rs1800566)

CC

64*

21

27

10

37*

11

 

CT

143

80

78

25

65

55

 

TT

28

22

13

4

5

18

TP53 Arg72Pro

(rs1042522)

CC

45

16

22

7

23

9

 

CG

126

78

66

23

60

55

 

GG

51

26

24

10

27

16

PTPN11 rs2301756

(rs2301756)

GG

175

85

92*

24

83*

61

 

GA

58

28

26

16

32

12

 

AA

4

2

0

1

4

1

STCH rs12479

(rs12479)

GG

102

58

51

20

51

38

 

GA

106

39

52

12

54

27

 

AA

22

15

10

8

12

7

STCH rs1882881

(rs1882881)

AA

58

34

24

13

34

21

 

AC

123

58

67

15

56

43

 

CC

57

31

26

13

31

18

STCH rs2242661

(rs2242661)

AA

69

31

34

12

35

19

 

AG

106

46

52

13

54

33

 

GG

44

26

22

13

22

13

STCH rs9982492

(rs9982492)

CC

85

45

41

15

44

30

 

CT

105

39

53

12

52

27

 

TT

28

18

14

9

14

9

SULT1A1 638G/A

(rs9282861)

GG

221

108

112

33

109

75

 

GA

16

10

6

6

10

4

 

AA

1

0

1

0

0

0

  1. * Bold type denotes significant difference in genotype frequencies