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Table 1 Primers and probes used in this study

From: Possible role of Escherichia coli in propagation and perpetuation of chronic inflammation in ulcerative colitis

Gene

Product size [bp]

Oligonucleotide sequence

hlyA

1177

GTA TAC ACA AAA GAA GGA AGC

  

ACA GAA TCG TCA GCA TCA GC

iroN

667

AAG TCA AAG CAG GGG TTG CCC G

  

GACGCCGACATTAAGACGCAG

iutA

302

GGC TGG ACA TCA TGG GAA CTG G

  

CGT CGG GAA CGG GTA GAA TCG

iha

829

CTG GCG GAG GCT CTG AGA TCA

  

TCC TTA AGC TCC CGC GGC TGA

ireA

254

GAT GAC TCA GCC ACG GGT AA

  

CCA GGA CTCA CCT CAC GAA T

chuA

279

GAC GAA CCA ACG GTC AGG AT

  

TGC CGC CAG TAC CAA AGA CA

Primers and probe specific for E. coli strains (Real-time PCR)

16S rRNA

204

GGG AGT AAA GTT AAT ACC TTT GC

  

CTC AAG CTT GCC AGT ATC AG

Probe

 

HEX- CGC GAT CAC TCC GTG CCA GCA GCC GCG GAT CGC G -BHQ1