Table 1 The nearest retroelement and the transcription of the 14 selected genes with and without CpG islands
Gene | CpG islands | Nearest retroelement | No. of expressed transcripts in the stomach | |
|---|---|---|---|---|
| Â | Â | Name of family | Distance to transcription start site | Â |
CDH1 | Yes | Alu | 0.3 kb | 19 |
ARRDC4 | Yes | Alu | 1.7 kb | 7 |
PPARG | Yes | Alu | 2.3 kb | 3 |
CDKN2A | Yes | LTR | 2.4 kb | 1 |
TRAPPC2L | Yes | Alu | 3.8 kb | 14 |
DUSP6 | Yes | Alu | 6.6 kb | 8 |
MLH1 | Yes | Alu | 6.6 kb | 0 |
RUNX3 | Yes | LTR | 8.3 kb | 0 |
PGA5 | No | Alu | 1.2 kb | 734 |
PGC | No | Alu | 1.6 kb | 33 |
TFF1 | No | Alu | 0.5 kb | 11 |
TFF2 | No | L1 | 2.7 kb | 632 |
MSLN | No | Alu | 1.4 kb | 50 |
KRT6A | No | Alu | 4.2 kb | 1 |